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News

Welcome Dipti

By | News

The CRI welcomes our new director, Dipti Ranganathan.

In addition to leading our operations and strategic planning, Dipti also serves as Assistant Dean for Academic & Administrative Information Systems for the Biological Sciences Division (BSD), leading the implementation of new technology solutions to improve strategic decision-making and operational efficiency. She joined the BSD from University of Texas Southwestern, where she led strategic initiatives including technology support for clinical research, research administration, and academic and educational technology. Dipti has a Bachelor’s degree in Industrial Engineering and Operations Research from the University of California, Berkeley, a Master’s degree in Operations Research also from Berkeley, and a Master’s degree in Computer Science from the University of California, San Diego. She is a member of the American Medical Informatics Association and the Association for American Medical Colleges, Group on Information Resources. 

Our former director, Dr. Sam Volchenboum, has been named Dean for Master’s Education in the BSD. He will now lead efforts to develop Master’s education programs in the BSD, beginning with a program in health sciences informatics. The CRI will continue to work with Sam as a research partner.

Announcing REDCap Office Hours

By | News, REDCap

Want to discuss if REDCap is right for your study or project?
Want another set of eyes to look over your project design?
Need technical help with field or form problem?

The CRI would like to announce the implementation of a new service – weekly REDCap office hours at the medical campus. Every Thursday from 1:00-3:00pm, you can visit CRI’s Peck Conference Room (N161A) to meet with our resident REDCap Administrator Julissa Acevedo. No appointment is necessary, but please email your question to Julissa ahead of time. We hope you take advantage of and enjoy this new service.

REDCap Feedback Survey

By | News, REDCap

Many thanks to UChicago’s REDCap community for their ongoing use of REDCap. Below is a link to an anonymous survey which asks for your feedback on topics such as training, support, and REDCap itself. Our goal is to use this feedback to help us identify areas of improvement.

2019 REDCap Feedback Survey

This link is NOT unique to you so feel free to share it with UChicago colleagues. This survey should take about 5-20 minutes to complete depending on the level of feedback you would like to provide. If you need more time, there is also a “Save & Return Later” option. The survey will remain open until Thursday, May 30th.

As a thank you for participating in our survey, you will be eligible to enter a raffle for REDCap branded products. After submitting your feedback survey, you will be directed to a new survey to complete a raffle entry. Your contact information will not be tied to your feedback responses, as they are two separate surveys. If you are one of our randomly selected winners, we will contact you on Friday, May 31st.

Thank you in advance for your time and participation!

CRI experts to present tutorial at AMIA 2019 Informatics Summit

By | News

The CRI’s Jorge Andrade, PhD, and Sam Volchenboum, MD, PhD, will join colleagues from Nemours Alfred I. duPont Hospital for Children and Columbia University to present a tutorial session at the American Medical Informatics Association (AMIA) 2019 Informatics Summit this March. 

The tutorial, titled “A Bioinformatics Tutorial for Analyzing Whole Exome Sequencing: Unstructured Data to Variant Interpretation,” will be attended by clinicians, biologists, biomedical researchers, and students who are using or planning to use high-throughput genomics data in their research. It will provide an opportunity to run whole exome sequencing (WES) bioinformatics pipelines for processing raw fastq files into variant call files via the CRI’s high performance computing cluster, as well as hands-on examples for interpreting WES variant data using publicly-available resources.

We are looking forward to joining our colleagues from other institutions and combining our expertise in bioinformatics analysis and high performance computing to offer a valuable experience to AMIA attendees.

CRI’s REDCap expert invited to teach for Vanderbilt’s REDCapU

By | News, REDCap

CRI Business Systems Analyst and resident REDCap expert Julissa Acevedo was recently invited to present for Vanderbilt University’s REDCapU, an online teaching tool to educate REDCap administrators so that they can better support their end users. Julissa presented on the topic of REDCap surveys for a webinar that was attended by 157 registrants from 120 institutions across 19 countries.

Julissa shares her deep knowledge of REDCap with researchers here through the CRI Seminar Series, training materials, and personal consultations.

In new partnership with NCI and Leidos Biomedical, CRI will add radiology images to neuroblastoma data commons

By | News

The CRI is expanding our Pediatric Cancer Data Commons (PCDC) with a new pilot project in partnership with Leidos Biomedical Research, Inc.

As part of the National Cancer Institute (NCI)’s DI-Cubed data integration project, we are using our expertise in data harmonization to develop a process to integrate medical imaging resources into the International Neuroblastoma Risk Group (INRG) Data Commons. This proof-of-concept study will focus on MIBG scans, an important imaging modality for neuroblastoma patients.

The DI-cubed Project is an effort to convert data from various clinical studies into a standardized format, and to demonstrate how this standardization can enable data from multiple studies to be combined, creating larger and more useful cohort sizes and making it possible to share data more easily between institutions. In addition to standardizing data from different sources, the project will bring together data from different domains, such as clinical data, imaging data, and genomic data. We are proud to contribute to this important national initiative. Read more about this project here.

Recent honors for CRI Director

By | News

CRI Director Sam Volchenboum, MD, PhD, is contributing his substantial expertise in pediatric oncology and biomedical informatics to several high-profile committees and advisory boards this year.

Sam has been appointed to two groups related to the National Cancer Institute (NCI) Cancer Research Data Commons (CRDC). He is a member of the Semantic Infrastructure Scientific Committee, a small committee that provides ongoing expert advice and direction for expanding the NCI’s Semantic Infrastructure to address the needs of the CRDC. He also serves on the Scientific and Technical Advisory Board for the CRDC. This Board provides input into the technical direction of the CRDC as well as guidance on how this important program can best serve the cancer research community.

In September, Sam was invited to and participated in the Biden Cancer Summit in Washington, DC. This summit brought together leaders from across regions, sectors, and disciplines to strategize on the best ways to continue improving the culture of cancer care and research. 

Sam’s expertise is being recognized within the University of Chicago, as well. He currently serves as Chair of the Board of Computing Activities and Services, a faculty statutory board appointed by the Provost, as well as sitting on the Provost’s IT Committee, which reviews IT projects and recommends allocations of IT resources in support of the University’s mission and institutional priorities.

CRI developing new community platform with Thirty Million Words

By | News

Building on our successful past and current work with Thirty Million Words (TMW), the CRI is helping build a new community platform for the initiative. TMW, directed by Dr. Dana Suskind, is an innovative, evidence-based intervention program designed to create a population-level shift in the knowledge and behavior of parents and caregivers to optimize foundational brain development in babies and young children, particularly those born into poverty.

Since the project began in 2014, the CRI’s applications development team has been a key collaborator in developing and supporting the informatics operations for TMW and associated studies. We are now expanding our work by building the infrastructure for the TMW Community Platform, a multi-year community-wide demonstration project that will implement TMW interventions through health and social service providers already working at scale in partner communities.

Under the leadership of Director of Applications Development Brian Furner and Sr. Programmer Seong Choi, the CRI is working with a selected development partner and the TMW team to build a technical platform that will facilitate the delivery of TMW interventions and the collection of data for analysis. The platform includes a web application that supports community and user management, participant enrollment and consent, delivery of newborn interventional content, and a dashboard to monitor implementation. Our team is also developing reporting infrastructure for the platform, as well as a demo version of the application that will be used to train TMW’s implementing staff. We expect to deploy the TMW Community Platform in July 2019.

CRI-built CTMS launches successfully

By | CTMS, News

We are happy to announce that ARTEMIS, the enterprise Clinical Trials Management System  developed by the CRI for the University of Chicago, went live today. Beth Martell, Executive Director of the Office of Clinical Research, joined the CRI team in our offices as the first study was entered into the system. 

With the system successfully deployed, our work on ARTEMIS is far from over. As clinical researchers at the University begin to use the system to initiate new trials, we will continue to refine it as well as developing and adding new functionality. CRI Director Sam Volchenboum commented, “I’m so proud to be a part of this amazing team. We built a clinical trials management system from the ground up, with a foundation like nothing else on the market. We’re one big step closer to creating a system that consumes and produces structured data from start to finish.”